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Other questions
@susanzuca Most likely, when the transactions were uploaded, the ACH were classed as debit card payments by QB.
The issue is that debit card payments do fall under the 1099-K umbrella.
For instance, in QB Desktop, if you were to put 'Debit' in the check number field, it would automatically exclude the transaction from the 1099-NEC or 1099-MISC.
I don't know exactly what the QBO equivalent would be, but I'm certain that there is some way to flag particular Expenses by payment type for this very reason.
A good first step would be to check exactly how these ACH transactions for the problem vendors were finalized after the upload.