Hi there, theliftersguild.
I'd like to add to this discussion and provide additional clarification regarding this matter.
Rest assured, I can see that you've done everything right in QuickBooks Online. You were able to properly match the payment to the square deposit including the fee.
To clarify, did the transaction report that you're using came from Square? I tried to replicate this on my end. However, I wasn't able to find the report, which would've allowed me to further check why these transactions are showing up together.
That said, I'd highly recommend consulting with them to verify why the report would display both the invoice and the deposit on one report.
Please don't hesitate to let me know if there's anything else I can help you with in the meantime. I'll be here to help you out.
