Hey there, @Amy7402. Thanks for joining the thread.
I'm here to help out with your question. You are correct in that QuickBooks Desktop only allows one school district. We pull this information from government tax tables. In order to best assist, I'd like to get some additional information. Assuming the employee's must have two school districts deducted, I'd like to know how the employee's have been set up. Are you trying to withhold for both the employer district and the employee home location district? If that's the case, I'd double-check with your local agencies to make sure you need to withhold both. We strive to keep the tax tables up-to-date, and we'd like to hear the outcome.
Just reply back with the additional information and we'll get you back up and running in no time! For more information on local taxes in QuickBooks Desktop, check out create or set up local taxes.
Please let me know if there's anything else I can do to be of assistance. Wishing you and your business continued success in all that you do.
