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Employees and payroll
Greetings, steven. I have some ideas to share regarding the information showing on your Profit and Loss (P&L) report in QuickBooks Online.
Before anything else, I want to ask where did you see the Net Pay amounts? This way, we can look into it further and guide you through what to do.
The Payroll Expenses area of your P&L report should ideally only reflect the Gross Wage and Employer Paid Taxes. If you see the net figure in that particular field,I suggest clicking on the amount hyperlink to review the transactions associated with it.
Note: Below is only an example report. Nonetheless, you can use it as a reference in drilling down the net amount.

Finally, I recommend reaching out to your accountant in case there are any journal entries or other transactions that may need to be deleted or modified in order to rectify this issue. This will help ensure that your books are well-organized and maintained in proper order.
Once you're good with this, you can also explore this useful guide about fixing discrepancies on your account balances: Reconcile an account in QuickBooks Online.
Keep me posted if there's anything else I can help you with your payroll transactions or reports. I'll be right here to assist you. Take care!