Hi Aimee Deverall, 

We are aware of this behavior and our engineers are actively working on the issue. Currently, the bank/financial institution has until 5 PM PT to deposit the money to the employee's accounts. However, we're actively tracking each of our affected customers to see if we can make this happen any sooner, or provide a more specific time frame. Please inform your employee to wait for their pay within the day and check their account from time to time. 

I'd recommend clicking the Subscribe To Update button on the link to receive notifications once the fix is available: QuickBooks Status.

Thanks for your patience. Take care!